Yandell-Lab / taxonomer_0.5
full taxonomer cython repository
☆22Updated 4 years ago
Related projects: ⓘ
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Adapters for trimming☆30Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆23Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- compare sequences to a shared root reference sequence.☆24Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- ☆12Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- A reference viral database (RVDB)☆24Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆45Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆16Updated 6 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 7 years ago