Yandell-Lab / taxonomer_0.5View external linksLinks
full taxonomer cython repository
☆22Dec 1, 2019Updated 6 years ago
Alternatives and similar repositories for taxonomer_0.5
Users that are interested in taxonomer_0.5 are comparing it to the libraries listed below
Sorting:
- ☆12Sep 11, 2025Updated 5 months ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 6 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- Visualize whole genome alignments as linear maps☆74Jan 21, 2026Updated 3 weeks ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Jan 12, 2026Updated last month
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)☆24Sep 4, 2017Updated 8 years ago
- ☆16Dec 26, 2022Updated 3 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- ☆28Dec 1, 2022Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 3 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- simple and not slow ORF caller☆21Nov 6, 2025Updated 3 months ago
- Kraken taxonomic sequence classification system☆221Sep 27, 2021Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Nov 18, 2025Updated 2 months ago
- ☆71Mar 7, 2019Updated 6 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 6 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Aug 16, 2023Updated 2 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 9 months ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago