broadinstitute / fireponyLinks
Efficient base quality score recalibrator for NGS data
☆24Updated 9 years ago
Alternatives and similar repositories for firepony
Users that are interested in firepony are comparing it to the libraries listed below
Sorting:
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 7 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 8 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Lacer: Accurate Base Quality Score Recalibration using Linear Algebra☆8Updated 3 years ago
- Scalable mpi aligner base on BWA☆7Updated 5 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- PacBio BAM C++ library☆21Updated last year
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 5 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆47Updated last week
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Aligner for sequencing data☆21Updated 9 years ago