broadinstitute / fireponyLinks
Efficient base quality score recalibrator for NGS data
☆24Updated 9 years ago
Alternatives and similar repositories for firepony
Users that are interested in firepony are comparing it to the libraries listed below
Sorting:
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆18Updated 7 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Scalable mpi aligner base on BWA☆7Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago