broadinstitute / fireponyLinks
Efficient base quality score recalibrator for NGS data
☆24Updated 9 years ago
Alternatives and similar repositories for firepony
Users that are interested in firepony are comparing it to the libraries listed below
Sorting:
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- ☆36Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 6 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆36Updated 7 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- http://bam.iobio.io☆47Updated last year
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago