fritzsedlazeck / sge_mummerLinks
Scripts to split reference and run mummer in parallel on an SGE cluster
☆11Updated 8 years ago
Alternatives and similar repositories for sge_mummer
Users that are interested in sge_mummer are comparing it to the libraries listed below
Sorting:
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆15Updated 7 years ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 6 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- Visualising discordant reads☆15Updated 9 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆12Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago