fritzsedlazeck / sge_mummerView external linksLinks
Scripts to split reference and run mummer in parallel on an SGE cluster
☆11Oct 14, 2016Updated 9 years ago
Alternatives and similar repositories for sge_mummer
Users that are interested in sge_mummer are comparing it to the libraries listed below
Sorting:
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- ☆25Mar 22, 2016Updated 9 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 5 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- The Dazzler Data Base☆36Feb 17, 2025Updated 11 months ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- ☆23Sep 9, 2025Updated 5 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A reference-assisted assembly tool for producing draft chromosome sequences.☆42Jun 24, 2024Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- ☆21Jan 3, 2025Updated last year
- ☆10Feb 20, 2024Updated last year
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated last year
- ☆13Updated this week
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- ☆12Sep 11, 2025Updated 5 months ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated last week
- ☆12Dec 12, 2014Updated 11 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago