cpockrandt / genmap
GenMap - Fast and Exact Computation of Genome Mappability
☆106Updated 10 months ago
Alternatives and similar repositories for genmap:
Users that are interested in genmap are comparing it to the libraries listed below
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- A tool for somatic structural variant calling using long reads☆127Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- Python programs for processing GFF3 files☆95Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Phased assembly variant caller☆112Updated 4 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆98Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Variant calling tool for long-read sequencing data☆108Updated last month
- Jasmine: SV Merging Across Samples☆210Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Somatic structural variant caller for long-read data☆65Updated 3 weeks ago
- Long read aligner☆115Updated last year
- Research release basecalling models and configurations☆110Updated 10 months ago
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- cDNA read preprocessing☆66Updated 8 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆145Updated 3 weeks ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated 3 weeks ago
- ☆90Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated this week
- Pangenome-based genome inference☆128Updated last week
- Same species annotation lift over pipeline.☆97Updated last year
- ☆39Updated last week
- accurate LiftOver tool for new genome assemblies☆125Updated 8 months ago