Alternatives and similar repositories for genmap

Users that are interested in genmap are comparing it to the libraries listed below

• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆140Updated last month
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆113Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 3 months ago
• twolinin / longphase
  ☆113Updated 2 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆110Updated 3 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 2 months ago
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆130Updated 3 weeks ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆98Updated 3 months ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆75Updated 11 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆95Updated 2 weeks ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆138Updated last week
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆101Updated 5 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆106Updated 3 weeks ago
• human-pangenomics / hpp_pangenome_resources
  ☆115Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆132Updated 11 months ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆104Updated last week
• EichlerLab / pav
  Phased assembly variant caller
  ☆121Updated 7 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• marbl / HG002
  A complete diploid human genome
  ☆121Updated 6 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated last year
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆85Updated 2 weeks ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆118Updated 3 weeks ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated 3 weeks ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year