maxemil / PhyloMagnetLinks
screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
☆11Updated 4 years ago
Alternatives and similar repositories for PhyloMagnet
Users that are interested in PhyloMagnet are comparing it to the libraries listed below
Sorting:
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- De novo VIral Genome Annotator☆23Updated 10 months ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 11 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 4 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 8 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 2 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆33Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- ☆20Updated last year
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago