maxemil / PhyloMagnet
screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
☆11Updated 4 years ago
Alternatives and similar repositories for PhyloMagnet:
Users that are interested in PhyloMagnet are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆20Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- ☆11Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- transposable element typing pipeline☆17Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 8 months ago
- ☆22Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Find Unique genomic Regions☆29Updated last month
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- Raspir, the rare species identifier☆11Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Surveillance of pathogens using population genomics and sequencing☆22Updated this week
- ☆19Updated 3 months ago
- Dadaist2 🟨 Highway to R☆13Updated last month
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated last month