PedroMTQ / mantisLinks
A package to annotate protein sequences
☆58Updated 3 months ago
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below
Sorting:
- ☆45Updated last year
- ☆41Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆49Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- ☆71Updated last month
- ☆38Updated 2 weeks ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- PHANOTATE: a gene caller for phages.☆76Updated 6 months ago
- gutSMASH☆53Updated 5 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆44Updated 2 months ago
- StrainFinder☆27Updated 6 years ago