A package to annotate protein sequences
☆63Feb 23, 2025Updated last year
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Jan 30, 2025Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 3 weeks ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Oct 10, 2023Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Jul 28, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A healthy human gut genome collection☆25Aug 21, 2025Updated 7 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆44Feb 17, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆618Feb 18, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆209Mar 5, 2026Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆103Mar 30, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆100Apr 3, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Mar 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Mar 18, 2026Updated 3 weeks ago
- Simple bacterial assembly and annotation pipeline☆85Mar 24, 2026Updated 2 weeks ago
- ☆22Apr 3, 2023Updated 3 years ago
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 2 months ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- antiSMASH☆253Mar 24, 2026Updated 2 weeks ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 6 months ago
- Build a partitioned pangenome graph from microbial genomes☆296Mar 30, 2026Updated last week
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- ☆20Mar 29, 2022Updated 4 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆204Aug 25, 2025Updated 7 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago