PedroMTQ / mantisLinks
A package to annotate protein sequences
☆60Updated 9 months ago
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- ☆45Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- ☆40Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- ☆41Updated 5 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 3 weeks ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Bacterial GWAS analysis☆46Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- MAG Circularization Method☆32Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- Python bindings for the TaxonKit library☆41Updated last week
- ☆80Updated last week
- Discover and annotate the virome☆54Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Unified Human Gut Virome Catalog☆38Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆50Updated 11 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 11 months ago