A package to annotate protein sequences
β63Feb 23, 2025Updated last year
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β27Jan 30, 2025Updated last year
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ75Mar 14, 2026Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.β63May 5, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databasesβ62Jun 25, 2025Updated last year
- Download assembly files from NCBIβ13May 9, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool for representing genomic potential and transcriptomic expression into KEGG pathwaysβ63Jul 28, 2024Updated last year
- A healthy human gut genome collectionβ26Aug 21, 2025Updated 11 months ago
- Pipeline for metabolic annotation of microbial genomesβ150Mar 20, 2025Updated last year
- Pathogenfinder2β18Apr 20, 2026Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.β101Jul 8, 2022Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)β109Jul 10, 2026Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microβ¦β272May 13, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomesβ335Jun 3, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ663Jul 10, 2026Updated last week
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GEne Cluster prediction with COnditional random fields.β85Mar 10, 2026Updated 4 months ago
- Plasmid and antimicrobial resistance pipelineβ16Apr 30, 2026Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryoticβ46Feb 17, 2023Updated 3 years ago
- A multi-reference network annotation tool to support omics analysisβ12May 31, 2022Updated 4 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketchesβ54Jun 9, 2026Updated last month
- Pan-genome inference and genotyping with long noisy or short accurate readsβ119Dec 13, 2024Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networksβ217Jul 13, 2026Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times fasterβ53May 8, 2026Updated 2 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.β89Oct 27, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagβ¦β105Jul 14, 2026Updated last week
- Simple bacterial assembly and annotation pipelineβ91Jul 15, 2026Updated last week
- A tool for domain based annotation with databases from the Conserved Domains Databaseβ30May 26, 2026Updated last month
- (Meta-)genome screening for functional and natural product gene sequencesβ117Updated this week
- antiSMASHβ260Jun 29, 2026Updated 3 weeks ago
- An updated pipeline for pangenome investigationβ365Jul 2, 2026Updated 2 weeks ago
- β23Apr 3, 2023Updated 3 years ago
- Scripts for calculating features and regression of prokaryote OGTβ25Feb 13, 2024Updated 2 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.β28Feb 14, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.β112Oct 20, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomesβ307Jul 10, 2026Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomesβ23Mar 20, 2026Updated 4 months ago
- β20Mar 29, 2022Updated 4 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome sizeβ12Sep 30, 2025Updated 9 months ago
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- some useful scripts for working with genomics and sequencing dataβ18Oct 31, 2019Updated 6 years ago