A package to annotate protein sequences
☆63Feb 23, 2025Updated last year
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆63Jul 28, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 10 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 21, 2026Updated last week
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆229Oct 20, 2026Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 5 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63May 5, 2026Updated 5 months ago
- ☆31Aug 2, 2026Updated 2 months ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- Build a partitioned pangenome graph from microbial genomes☆312Oct 21, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Oct 19, 2026Updated last week
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Updated this week
- Metagenomic Binning Algorithm☆56Oct 22, 2026Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Aug 21, 2026Updated 2 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 5 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated 3 weeks ago
- ☆65Feb 27, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- A healthy human gut genome collection☆26Aug 21, 2025Updated last year
- Pathogenfinder2☆19Apr 20, 2026Updated 6 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆213Sep 22, 2026Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An updated pipeline for pangenome investigation☆378Updated this week
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 4 years ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆24Mar 20, 2026Updated 7 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆96May 3, 2025Updated last year
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago