PedroMTQ / mantisLinks
A package to annotate protein sequences
☆59Updated 6 months ago
Alternatives and similar repositories for mantis
Users that are interested in mantis are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- ☆45Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆37Updated this week
- Discover and annotate the virome☆49Updated 2 weeks ago
- ☆40Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 7 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- ☆41Updated last year
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Gene-flank analysis tool☆30Updated 9 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 8 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆28Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Bacterial GWAS analysis☆43Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 10 months ago