metasnv-tool / metaSNVLinks
MetaSNV, a metagenomic SNV calling pipeline.
☆20Updated 3 years ago
Alternatives and similar repositories for metaSNV
Users that are interested in metaSNV are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- ☆16Updated 5 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- ☆23Updated 4 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- scripts for microbiome analysis☆11Updated 11 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- A functional profiler for metagenomes using FracMinHash☆16Updated 4 months ago
- ☆22Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year