metasnv-tool / metaSNVLinks
MetaSNV, a metagenomic SNV calling pipeline.
☆20Updated 3 years ago
Alternatives and similar repositories for metaSNV
Users that are interested in metaSNV are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- ☆13Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- ☆17Updated 5 years ago
- ☆24Updated 5 months ago
- strain-level analysis tools☆38Updated 8 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 5 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆38Updated 10 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Microbial agile accurate SNP Typer☆30Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 7 months ago
- Dadaist2 🟨 Highway to R☆13Updated 4 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago