ParkinsonLab / MetaPro
☆19Updated this week
Alternatives and similar repositories for MetaPro:
Users that are interested in MetaPro are comparing it to the libraries listed below
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- ☆32Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- ☆57Updated 3 weeks ago
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ☆42Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- An algorithm for clustering metagenomic sequences.☆33Updated last month
- ☆44Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Prophage Activity Estimator☆26Updated 7 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last month
- Discover and annotate the virome☆35Updated 3 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆23Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- KEGG Module Evaluation Tool☆27Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Bacterial GWAS analysis☆34Updated last month
- ☆26Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year