mbhall88 / pistis
Quality control plotting for long reads
☆10Updated 8 months ago
Alternatives and similar repositories for pistis:
Users that are interested in pistis are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Genome-Genome circle synteny☆23Updated last year
- ☆32Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆21Updated 5 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 4 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆55Updated last week
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆16Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆16Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ContScout sequence contamination filter tool☆19Updated 2 weeks ago