Quality control plotting for long reads
☆10May 14, 2024Updated 2 years ago
Alternatives and similar repositories for pistis
Users that are interested in pistis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 8, 2022Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Apr 6, 2022Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆29Jun 1, 2017Updated 9 years ago
- ☆16May 21, 2026Updated 4 months ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 11 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Aug 12, 2026Updated 2 months ago
- ☆16Jun 30, 2021Updated 5 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆120Aug 26, 2026Updated last month
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆21Sep 9, 2026Updated last month
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 3 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆13Sep 17, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆35Feb 20, 2020Updated 6 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 5 months ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- ☆12May 6, 2021Updated 5 years ago
- Calculate GC% and GC deviation for circular genomes☆17Oct 15, 2025Updated last year
- Tools used to analyze data from nanopore-based experiments.☆33Feb 1, 2015Updated 11 years ago
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated last month
- De novo assembly from Oxford Nanopore reads.☆90Jun 29, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- A pipeline for Nanopore single cell isoform quantification in R☆14Updated this week
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- Fully automated generation of UCSC assembly hubs☆34Oct 2, 2024Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago