mbhall88 / pistis
Quality control plotting for long reads
☆10Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for pistis
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Genomewide Epistasis Analysis on Bacteria☆13Updated 2 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆15Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆23Updated this week
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Genome-Genome circle synteny☆23Updated 11 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated 2 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆17Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆15Updated 4 years ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- ☆32Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆19Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆39Updated this week
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆25Updated this week
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- STAG: Species Tree from All Genes☆31Updated 5 years ago