mbhall88 / pistisLinks
Quality control plotting for long reads
☆10Updated last year
Alternatives and similar repositories for pistis
Users that are interested in pistis are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆29Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 5 months ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- ☆14Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- ☆32Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 6 months ago
- Genome-Genome circle synteny☆25Updated last year
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆28Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆22Updated 4 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Automatic evaluation of HGTs☆30Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated 2 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆39Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- ☆29Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago