mbhall88 / pistisLinks
Quality control plotting for long reads
☆10Updated last year
Alternatives and similar repositories for pistis
Users that are interested in pistis are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Colinear block visualisation tool☆31Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆28Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Genomewide Epistasis Analysis on Bacteria☆14Updated last month
- Genome-Genome circle synteny☆25Updated last year
- ☆14Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- DarkHorse2 source code☆10Updated 3 years ago
- Population analysis PIPEline 🛠🧬☆20Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Updated 7 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Gene-flank analysis tool☆27Updated 6 months ago