nebiolabs / domainatorLinks
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
☆21Updated 6 months ago
Alternatives and similar repositories for domainator
Users that are interested in domainator are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 8 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 5 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆53Updated last year
- Software for predicting translation initiation rates in bacteria☆29Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- MacSyFinder models allowing for a systematic search of anti-phage systems☆22Updated 7 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 5 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆30Updated 8 months ago
- Discovery of conserved gene clusters in multiple genomes☆84Updated 4 months ago
- ☆39Updated 3 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last week
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆63Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 4 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- PHANOTATE: a gene caller for phages.☆77Updated 9 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆18Updated 3 weeks ago