nebiolabs / domainatorLinks
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
☆28Updated this week
Alternatives and similar repositories for domainator
Users that are interested in domainator are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆76Updated 9 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 4 months ago
- ☆43Updated 7 months ago
- ☆33Updated 3 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆66Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last month
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- PHANOTATE: a gene caller for phages.☆81Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 5 years ago
- ☆21Updated 6 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- ☆17Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 7 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Updated 3 weeks ago
- ☆45Updated 2 years ago