ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test
☆15Mar 7, 2019Updated 7 years ago
Alternatives and similar repositories for ALDEx2_dev
Users that are interested in ALDEx2_dev are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Mar 14, 2023Updated 3 years ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- ☆12Oct 28, 2021Updated 4 years ago
- ☆20Sep 16, 2026Updated 3 weeks ago
- Distance denoise by Entropy☆16Oct 17, 2025Updated 11 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- ☆22Sep 4, 2024Updated 2 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆21Mar 8, 2026Updated 7 months ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆24Mar 3, 2026Updated 7 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆105Jul 11, 2023Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆45Aug 19, 2026Updated last month
- wrapper functions to use ggstatsplot functions as a module in jamovi☆11Oct 1, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated last month
- Sample Metadata Curation for curatedMetagenomicData☆32Updated this week
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- ☆23Sep 28, 2026Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆24Mar 20, 2026Updated 6 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆92Jul 13, 2026Updated 2 months ago
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- R implementation of the LEfSe method☆68May 14, 2026Updated 4 months ago
- OpenAI Discord is a AI-powered bot for Discord that leverages the OpenAI API. It enables users to interact with ChatGPT and DALL-E in a n…☆13Aug 3, 2023Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆78Aug 24, 2023Updated 3 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆59Jul 9, 2024Updated 2 years ago