Alternatives and similar repositories for kegg_pull

Users that are interested in kegg_pull are comparing it to the libraries listed below

• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated 10 months ago
• IKIM-Essen / RiboSnake
  16S pipeline using qiime2 created with snakemake
  ☆12Updated 2 weeks ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• ablab / nerpa
  ☆16Updated 6 months ago
• vlasmirnov / MAGUS
  Graph Clustering Merger
  ☆36Updated last year
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated last month
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 6 months ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆14Updated 3 years ago
• hmdlab / ARG-BERT
  ☆10Updated 6 months ago
• boxiangliu / covseq
  CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
  ☆15Updated 5 years ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated 2 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆14Updated 4 months ago
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated 2 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆25Updated last year
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• Edinburgh-Genome-Foundry / Sequeduct
  Sequencing analysis pipeline
  ☆14Updated 4 months ago
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated last year
• nf-core / proteinfamilies
  Generation and update of protein families
  ☆20Updated this week
• abadona / qsimscan
  Automatically exported from code.google.com/p/qsimscan
  ☆13Updated 4 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆24Updated 4 months ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• SchlossLab / snakemake_cluster_tutorial
  Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.
  ☆14Updated 3 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆11Updated 4 years ago