allie-walker / Natural-product-functionLinks
scripts for predicting natural product activity from biosynthetic gene cluster sequences
☆24Updated 4 months ago
Alternatives and similar repositories for Natural-product-function
Users that are interested in Natural-product-function are comparing it to the libraries listed below
Sorting:
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆95Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 10 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- ☆21Updated 7 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- ☆20Updated 3 years ago
- Discovery of conserved gene clusters in multiple genomes☆125Updated 3 weeks ago
- PaperBLAST: find papers about a protein or its homologs☆51Updated 3 weeks ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Updated last week
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 8 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆16Updated last month
- Phage Annotation using Protein Structures☆148Updated last week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16Updated 2 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Updated 9 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- ☆17Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆72Updated last month
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Updated last year
- UniProt Id Mapping through API☆36Updated 4 months ago
- ☆43Updated 7 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆152Updated last week
- Viral protein family functional prediction using protein language models☆21Updated last month
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆65Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆162Updated last month