scripts for predicting natural product activity from biosynthetic gene cluster sequences
☆24Mar 16, 2026Updated 2 months ago
Alternatives and similar repositories for Natural-product-function
Users that are interested in Natural-product-function are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆26May 2, 2026Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 9 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- ☆20Mar 29, 2022Updated 4 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Apr 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 4 months ago
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆168Apr 1, 2026Updated last month
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆32Jan 5, 2025Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Apr 9, 2026Updated last month
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆109Apr 30, 2026Updated 3 weeks ago
- BGC Detection and Classification Using Deep Learning☆158Nov 11, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 2 months ago
- Bioinformatics Tools☆91Updated this week
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- antiSMASH☆255Mar 24, 2026Updated 2 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated last month
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jan 7, 2026Updated 4 months ago
- ☆19Oct 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- ☆32Mar 20, 2025Updated last year
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Aug 19, 2022Updated 3 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆36Updated this week
- ☆77Mar 10, 2024Updated 2 years ago
- ☆29May 7, 2026Updated 2 weeks ago
- ☆11Apr 25, 2026Updated 3 weeks ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- ☆13Aug 30, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆37Feb 26, 2026Updated 2 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 6 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 18, 2026Updated last week
- ☆52Mar 29, 2026Updated last month
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago