Alternatives and similar repositories for Natural-product-function:

Users that are interested in Natural-product-function are comparing it to the libraries listed below

• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆39Updated last month
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆23Updated this week
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated 11 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 6 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆34Updated last month
• SushiLab / magpipe
  ☆19Updated 2 years ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆44Updated last month
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆18Updated 2 weeks ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆78Updated 3 months ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆13Updated last month
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆21Updated 2 years ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆57Updated 2 months ago
• kelwyres / Bactabolize
  ☆38Updated 2 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆19Updated last year
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 5 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated 3 weeks ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆59Updated 2 weeks ago
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆21Updated last week
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated last month
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆46Updated 5 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 3 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆32Updated 5 months ago
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆11Updated 2 years ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆67Updated last month
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 8 months ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆20Updated 2 weeks ago