RelocaTE2
☆19Oct 6, 2023Updated 2 years ago
Alternatives and similar repositories for RelocaTE2
Users that are interested in RelocaTE2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Transposable element polymorphism identification☆35Jul 22, 2020Updated 6 years ago
- ☆51Aug 27, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 2024 BreedWheat Genomic Selection pipeline☆15Jan 3, 2024Updated 2 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- use long sequenced reads to close gaps in assemblies☆39Sep 4, 2018Updated 8 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- ☆11Mar 14, 2026Updated 6 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆284Aug 10, 2026Updated last month
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 3 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- A library for running k-mers based GWAS☆129Oct 29, 2024Updated last year
- Impute DNA methylation from WGBS data.☆12Apr 23, 2019Updated 7 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- Extensive de-novo TE Annotator☆469Sep 10, 2026Updated last week
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated last month
- Scripts for homology and orthology assessment from genomic sequences.☆19Jul 24, 2026Updated last month
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- ☆32Nov 25, 2019Updated 6 years ago