RelocaTE2
☆19Oct 6, 2023Updated 3 years ago
Alternatives and similar repositories for RelocaTE2
Users that are interested in RelocaTE2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Mar 5, 2019Updated 7 years ago
- Transposable element polymorphism identification☆35Jul 22, 2020Updated 6 years ago
- Unfazed by genomic variant phasing☆29May 26, 2024Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- Structural variant calling tutorial using long-reads.☆11Sep 30, 2026Updated last month
- Algorithm to detect germline and de novo transposon insertions☆39Aug 24, 2026Updated 2 months ago
- Julia module to perform haplotype allele-specific DNA methylation analysis.☆10Apr 14, 2026Updated 6 months ago
- 2024 BreedWheat Genomic Selection pipeline☆15Jan 3, 2024Updated 2 years ago
- ☆51Aug 27, 2019Updated 7 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- A fast and memory-efficient method for haplotype assembly from long gapless reads.☆10Jun 11, 2018Updated 8 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆148Sep 16, 2022Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆252Sep 6, 2024Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- ☆13Mar 12, 2020Updated 6 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- My published program for estimating the population recombination rate.☆11Apr 21, 2017Updated 9 years ago
- ☆16Oct 9, 2024Updated 2 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 6 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year