schatzlab / crossstitchLinks
Code for phasing SVs with SNPs
☆52Updated 5 years ago
Alternatives and similar repositories for crossstitch
Users that are interested in crossstitch are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆39Updated last month
- ☆81Updated 5 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆77Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- ☆48Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆31Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆31Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- A battery of methylation tools for PacBio HiFi reads☆40Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- ☆22Updated 4 years ago
- ☆36Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant merging tool☆53Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated last year
- Working space for the GIAB TR benchmarking project☆21Updated 10 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago