schatzlab / crossstitchLinks
Code for phasing SVs with SNPs
☆53Updated 5 years ago
Alternatives and similar repositories for crossstitch
Users that are interested in crossstitch are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆42Updated 6 months ago
- ☆84Updated 11 months ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- ☆78Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- ☆51Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant merging tool☆57Updated last year
- ☆33Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- ☆36Updated last year
- Structural variant caller☆55Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆31Updated 6 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated 2 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- ☆44Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago