shilpagarg / WHdenovo
☆47Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for WHdenovo
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆77Updated 4 years ago
- ☆48Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆97Updated 3 years ago
- ☆79Updated 6 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago
- Structural variant caller☆54Updated 2 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- ☆46Updated 4 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- TGS scaffolding☆46Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- SV genotyping with long reads☆40Updated last year
- Simple pileup-based variant caller☆83Updated 7 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆43Updated 7 years ago
- A tool for evaluate long-read de novo assembly results☆42Updated 2 months ago
- ☆72Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago