shilpagarg / WHdenovoLinks
☆46Updated 5 years ago
Alternatives and similar repositories for WHdenovo
Users that are interested in WHdenovo are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆78Updated 5 years ago
- ☆83Updated 10 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- ☆51Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago
- VNTR annotation using motif selection☆39Updated last month
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- TGS scaffolding☆47Updated 4 years ago
- Structural variant caller☆55Updated 4 years ago
- ☆68Updated 2 weeks ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- ☆35Updated 5 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago