shilpagarg / WHdenovo
☆47Updated 4 years ago
Alternatives and similar repositories for WHdenovo:
Users that are interested in WHdenovo are comparing it to the libraries listed below
- ☆76Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆79Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- ☆48Updated 10 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆33Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- TGS scaffolding☆46Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆43Updated 8 years ago
- Structural variant caller☆54Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- Show pangenome graphs in an easy way☆55Updated 2 years ago