clemgoub / TypeTELinks
Genotyping of segregating mobile elements insertions
☆19Updated 4 years ago
Alternatives and similar repositories for TypeTE
Users that are interested in TypeTE are comparing it to the libraries listed below
Sorting:
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Structural variant merging tool☆53Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- ☆35Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆20Updated last year
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Tools for merging Tandem Repeat VCF files☆33Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆51Updated 6 years ago
- Easy genomic regions for short-read variant calling☆36Updated 2 weeks ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆19Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- A transposition caller.☆10Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago