benoukraflab / NanoVarLinks
Structural variant caller for low-depth long-read sequencing data
☆29Updated 11 months ago
Alternatives and similar repositories for NanoVar
Users that are interested in NanoVar are comparing it to the libraries listed below
Sorting:
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆78Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Variant annotation and merging pipeline☆41Updated 4 months ago
- ☆83Updated 9 months ago
- Structural variant caller☆55Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Simple pileup-based variant caller☆95Updated 7 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- ☆52Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- ☆31Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆89Updated 3 weeks ago
- ☆49Updated last year
- ☆22Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- ☆30Updated 4 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- ☆26Updated 3 months ago
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago