Structural variant caller for low-depth long-read sequencing data
☆30Jan 6, 2025Updated last year
Alternatives and similar repositories for NanoVar
Users that are interested in NanoVar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- ☆16Jan 15, 2025Updated last year
- ☆20Mar 13, 2026Updated 7 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 7 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Oct 25, 2021Updated 5 years ago
- Variant annotation and merging pipeline☆44Jul 22, 2025Updated last year
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- ☆18Sep 28, 2026Updated last month
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- ☆49Mar 19, 2023Updated 3 years ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 3 weeks ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software infrastructure for efficient representation of full genomes and their SNPs☆11Aug 27, 2026Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Third-generation fusion gene detection☆13Oct 23, 2026Updated last week
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆77May 22, 2023Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- An SV caller from paired-end NGS data.☆19Updated this week