fritzsedlazeck / nibSVView external linksLinks
Kmer based genotyper for short reads.
☆23Oct 19, 2021Updated 4 years ago
Alternatives and similar repositories for nibSV
Users that are interested in nibSV are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- ☆46Jun 21, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Visualization tool for (meta)genome assembly graphs☆24Updated this week
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- ☆16Jan 10, 2022Updated 4 years ago
- ☆28Apr 9, 2025Updated 10 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Jan 21, 2026Updated 3 weeks ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- ☆13Nov 3, 2025Updated 3 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 7 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- ☆22May 26, 2021Updated 4 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Nov 16, 2016Updated 9 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago