Kmer based genotyper for short reads.
☆23Oct 19, 2021Updated 5 years ago
Alternatives and similar repositories for nibSV
Users that are interested in nibSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Nov 30, 2023Updated 2 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 3 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆41Apr 12, 2021Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a GFA toolkit☆13Oct 4, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆44Jul 16, 2026Updated 3 months ago
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆14Feb 8, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆20Apr 13, 2022Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- ☆12Oct 13, 2021Updated 5 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Structural Variant Index☆77Jul 1, 2026Updated 4 months ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆23May 26, 2021Updated 5 years ago
- Lightweight String Graph Construction☆11May 10, 2023Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Toolkit for calling structural variants using short or long reads☆120Oct 30, 2026Updated last week
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- ☆17Jan 5, 2021Updated 5 years ago