Kmer based genotyper for short reads.
☆23Oct 19, 2021Updated 4 years ago
Alternatives and similar repositories for nibSV
Users that are interested in nibSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated last month
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆46Jun 21, 2020Updated 6 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆23May 26, 2021Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆106Sep 1, 2022Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pan-genome Seed Index☆20Jul 3, 2026Updated 2 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 6 months ago
- Structural Variant Index☆76Jul 1, 2026Updated 2 months ago
- Materials for Spring 2021 Applied Genomics Course☆54Apr 21, 2021Updated 5 years ago
- ☆17May 23, 2026Updated 4 months ago
- ☆28Apr 9, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago