fritzsedlazeck / nibSV

Related projects ⓘ

Alternatives and complementary repositories for nibSV

• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 6 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 2 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆25Updated 2 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆20Updated 8 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆27Updated last week
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 5 months ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 3 weeks ago
• zeeev / DASVC
  De-novo Assembly Structural Variant Caller
  ☆13Updated 8 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆26Updated 3 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆14Updated 4 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 3 months ago
• jts / mbtools
  ☆13Updated last year
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆23Updated 7 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 2 years ago
• lh3 / gffio
  ☆32Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆19Updated 5 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago