treangenlab / emu
☆50Updated 3 months ago
Alternatives and similar repositories for emu
Users that are interested in emu are comparing it to the libraries listed below
Sorting:
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated 2 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- A toolbox for comparative genomics.☆103Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- Reorients assembled microbial sequences☆117Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated 3 weeks ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- ☆50Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆45Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated this week
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆71Updated 9 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Using ggtree to build phylogenetic trees☆47Updated 6 months ago
- Metagenomic classification of long-read sequencing data☆83Updated this week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- ☆46Updated 2 months ago