☆95Apr 5, 2026Updated 3 months ago
Alternatives and similar repositories for emu
Users that are interested in emu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Updated this week
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆50Jan 23, 2026Updated 6 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 3 weeks ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆193Updated this week
- Convert genbank files to a swath of other formats☆32Jun 25, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial GWAS analysis☆57Jun 12, 2026Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- Interpretative standards for AMR genotypes☆30Updated this week
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated last month
- Metagenomic classification of long-read sequencing data☆107Jan 22, 2026Updated 6 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- A repository for collecting GPU basecalling stats☆90May 11, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆46Updated this week
- Rapid & standardized genome annotation using protein structural information☆71Jul 2, 2026Updated 3 weeks ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆31Jun 12, 2026Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Ultrafast identification of signature sequences in microbial genomes☆19Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- Precise host read removal☆128Apr 13, 2026Updated 3 months ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 6 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆100Jun 8, 2026Updated last month