genomicsITER / NanoCLUSTLinks
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
☆113Updated 2 years ago
Alternatives and similar repositories for NanoCLUST
Users that are interested in NanoCLUST are comparing it to the libraries listed below
Sorting:
- Metagenomic classification of long-read sequencing data☆97Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆145Updated 3 months ago
- Create a tree using Mash distances☆177Updated 2 years ago
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆229Updated 2 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- SKESA assembler☆123Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆184Updated 2 weeks ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- ☆134Updated this week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week
- Interactive quality assessment of genome assemblies☆116Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated this week
- DAS Tool☆161Updated last year
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆128Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago