Alternatives and similar repositories for NanoCLUST

Users that are interested in NanoCLUST are comparing it to the libraries listed below

• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆127Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated 3 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• lskatz / mashtree
  Create a tree using Mash distances
  ☆167Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆198Updated last year
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 months ago
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆166Updated 11 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆185Updated 10 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆136Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆213Updated last month
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆106Updated last month
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆155Updated this week
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆137Updated this week
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆188Updated 3 weeks ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆198Updated 10 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆182Updated 3 weeks ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆115Updated 3 months ago
• Gaius-Augustus / GALBA
  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…
  ☆145Updated 4 months ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆134Updated this week
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆126Updated 4 months ago
• wdecoster / chopper
  ☆194Updated last month
• cmks / DAS_Tool
  DAS Tool
  ☆150Updated last year
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• ncbi / SKESA
  SKESA assembler
  ☆119Updated 7 months ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆103Updated 4 years ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆79Updated last month
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆145Updated last month