NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
☆117Nov 20, 2023Updated 2 years ago
Alternatives and similar repositories for NanoCLUST
Users that are interested in NanoCLUST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow full-length 16S profiling pipeline for ONT reads☆27Nov 16, 2023Updated 2 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆68Apr 21, 2025Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Feb 3, 2020Updated 6 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- ☆98Apr 5, 2026Updated 4 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- ☆14Sep 26, 2019Updated 6 years ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆54Updated this week
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- PuntSeq - Chasing the microbial diversity of Cambridge's freshwater☆20Nov 12, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆51Jan 23, 2026Updated 7 months ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆671Aug 7, 2026Updated 3 weeks ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An overview of all nanopack tools☆290Jun 2, 2023Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆524May 20, 2026Updated 3 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- Assembly of Nanopore Sequencing☆17Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆429May 20, 2026Updated 3 months ago
- Comparison of multiple long read datasets☆180Aug 3, 2026Updated 3 weeks ago
- Nanopore sequence read simulator☆311Mar 12, 2026Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads