genomicsITER / NanoCLUSTLinks
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
☆114Updated 2 years ago
Alternatives and similar repositories for NanoCLUST
Users that are interested in NanoCLUST are comparing it to the libraries listed below
Sorting:
- Metagenomic classification of long-read sequencing data☆100Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last month
- DDBJ Fast Annotation and Submission Tool☆84Updated last week
- SKESA assembler☆124Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆149Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120Updated last year
- Foreign Contamination Screening caller scripts and documentation☆157Updated 10 months ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- Interactive quality assessment of genome assemblies☆118Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Updated 3 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆234Updated 4 months ago
- ☆135Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆125Updated 2 weeks ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated 2 months ago
- Create a tree using Mash distances☆181Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆193Updated last week
- DAS Tool☆169Updated last year
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆81Updated 9 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆92Updated 7 months ago