Real-time analysis pipeline for nanopore 16S rRNA data
☆15Nov 29, 2022Updated 3 years ago
Alternatives and similar repositories for NanoRTax
Users that are interested in NanoRTax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow full-length 16S profiling pipeline for ONT reads☆26Nov 16, 2023Updated 2 years ago
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- ☆96Apr 5, 2026Updated 4 months ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jun 30, 2021Updated 5 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 2 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆117Updated this week
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- ☆22Jun 1, 2026Updated 2 months ago
- ☆15May 22, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 9 months ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- Pipeline for the Nanopore 16S and ITS long read clustering and taxonomy classification☆20Jun 12, 2026Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 9 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆47Jul 30, 2026Updated 2 weeks ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆41Apr 6, 2026Updated 4 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- ☆16May 21, 2026Updated 2 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 10 months ago
- Customer workshop materials☆19May 13, 2026Updated 3 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- CLI to automate Nextflow pipeline testing