Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
☆24Oct 22, 2026Updated last week
Alternatives and similar repositories for TRANA
Users that are interested in TRANA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆17Oct 22, 2026Updated last week
- This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates☆13May 21, 2026Updated 5 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- ☆101Apr 5, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.☆11Oct 7, 2026Updated 3 weeks ago
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- QC cutoffs for different genomes.☆19Oct 21, 2026Updated last week
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 6 months ago
- Nanopore field sequencing pipeline for untargeted (aka. metagenomics) virus sequencing☆13Jun 29, 2026Updated 4 months ago
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Assembly of Nanopore Sequencing☆17Oct 9, 2026Updated 2 weeks ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for general metagenomics Nextflow pipeline☆28Updated this week
- ☆51Jan 23, 2026Updated 9 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆18Jan 29, 2024Updated 2 years ago
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 11 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 7 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆264Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultima scripts related to downstream processing of WGS, MRD, methylation analysis☆11Sep 24, 2026Updated last month
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- Surveillance of pathogens using population genomics and sequencing☆62Oct 7, 2026Updated 3 weeks ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 6 months ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-…☆11Jun 15, 2026Updated 4 months ago
- BioBTree v2: An MCP-enabled biomedical graph database unifying 70+ datasets.☆20Oct 14, 2026Updated 2 weeks ago