josephpetrone / RESCUELinks
Resolving Species Level Classification Using Emu
☆14Updated last year
Alternatives and similar repositories for RESCUE
Users that are interested in RESCUE are comparing it to the libraries listed below
Sorting:
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- MAG Circularization Method☆32Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Bacterial GWAS analysis☆46Updated last month
- Neptune: Genomic Signature Discovery☆20Updated last year
- Discover and annotate the virome☆54Updated last month
- Remove human reads from a sequencing run☆45Updated last week
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- ☆24Updated 10 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Genome size estimation from long read overlaps☆74Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆30Updated this week
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago