Resolving Species Level Classification Using Emu
☆14Jun 14, 2024Updated last year
Alternatives and similar repositories for RESCUE
Users that are interested in RESCUE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22May 21, 2026Updated 3 weeks ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆49Jan 23, 2026Updated 4 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last month
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- ☆15Feb 10, 2025Updated last year
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 7 months ago
- a tool for simulating nanopore raw signal data☆78Mar 4, 2026Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Updated this week
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Jun 4, 2026Updated last week
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆91Apr 5, 2026Updated 2 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆25Sep 25, 2024Updated last year
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 5 months ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- A genome browser in your Jupyter notebook☆31Mar 13, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ancient microbiome snakemake workflow☆29May 27, 2026Updated 2 weeks ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- More scalable dereplication for metagenome assembled genomes☆83May 16, 2026Updated 3 weeks ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago