Resolving Species Level Classification Using Emu
☆14Jun 14, 2024Updated 2 years ago
Alternatives and similar repositories for RESCUE
Users that are interested in RESCUE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 11 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Updated this week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆48Jun 19, 2026Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jul 11, 2026Updated last week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 7 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 9 months ago
- ☆50Jan 23, 2026Updated 6 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 4 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- ☆15Feb 10, 2025Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆31Jun 12, 2026Updated last month
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Updated this week
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A genome browser in your Jupyter notebook☆31Mar 13, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Materials and presentation for the 2023 ISB Microbiome course.☆25Sep 25, 2024Updated last year
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated last month
- ☆15May 21, 2026Updated 2 months ago
- ☆95Apr 5, 2026Updated 3 months ago