dbeisser / Natrix2Links
Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.
☆13Updated 3 weeks ago
Alternatives and similar repositories for Natrix2
Users that are interested in Natrix2 are comparing it to the libraries listed below
Sorting:
- (Meta-)genome screening for functional and natural product gene sequences☆93Updated this week
- ☆39Updated last month
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 6 months ago
- Metagenomic classification of long-read sequencing data☆95Updated this week
- Simple bacterial assembly and annotation pipeline☆78Updated 3 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆62Updated 8 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 3 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Small variant calling for haploid samples☆45Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- A toolbox for comparative genomics.☆105Updated 4 years ago
- Bioinformatics program inStrain☆177Updated 6 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- ☆72Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆142Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 3 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆112Updated 7 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆168Updated this week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆115Updated last week
- ☆73Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 5 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆141Updated 2 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆59Updated last year