ljdursi / poapyLinks
A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes
☆74Updated last year
Alternatives and similar repositories for poapy
Users that are interested in poapy are comparing it to the libraries listed below
Sorting:
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- Assembled Genomes Compressor☆175Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Updated 10 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- BWT construction and search☆122Updated this week
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆90Updated 7 months ago
- Bidirectional WFA (Paper)☆48Updated last year
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆62Updated 4 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆68Updated last year
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 6 months ago
- Genome inference from a population reference graph☆96Updated 8 months ago
- Python bindings to spoa☆21Updated last week
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Python bindings to bwa mem☆32Updated 5 years ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- ☆67Updated last year
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆94Updated last month