Alternatives and similar repositories for mummer-idotplot

Users that are interested in mummer-idotplot are comparing it to the libraries listed below

• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 6 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 6 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 8 months ago
• VGP / vgp-tools
  ☆28Updated 9 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated 2 weeks ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 4 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 5 months ago
• pierrepeterlongo / back_to_sequences
  ☆46Updated 2 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 7 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆27Updated 4 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 5 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 5 months ago