Alternatives and similar repositories for mummer-idotplot

Users that are interested in mummer-idotplot are comparing it to the libraries listed below

• lh3 / gffio
  ☆32Updated 2 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated last week
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 2 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated 2 weeks ago
• VGP / vgp-tools
  ☆28Updated 6 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 5 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated 11 months ago
• SR-Martin / alvis
  ☆20Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 7 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year