Alternatives and similar repositories for spodgi

Users that are interested in spodgi are comparing it to the libraries listed below

• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 4 years ago
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆24Updated this week
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• richarddurbin / hexamer
  find likely coding segments in DNA using composition-normalised hexamer tables
  ☆18Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated last week
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 4 months ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• AlgoLab / galig
  A graph aligner
  ☆29Updated last year
• jfarek / alignstats
  Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
  ☆19Updated last year
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆11Updated 8 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆17Updated 3 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆35Updated 7 years ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆10Updated 3 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• NCBI-Hackathons / NovoGraph
  NovoGraph: building whole genome graphs from long-read-based de novo assemblies
  ☆46Updated 4 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆11Updated 2 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago