pangenome / spodgiLinks
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
☆11Updated last year
Alternatives and similar repositories for spodgi
Users that are interested in spodgi are comparing it to the libraries listed below
Sorting:
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 4 years ago
- Library for the Handle Graph abstraction☆24Updated 2 weeks ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Population genetics analysis on VG☆16Updated 4 years ago
- GBWT-based handle graph☆31Updated this week
- Convert HAL to VG☆23Updated last year
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- the pangenome graph evaluator☆29Updated 4 years ago
- GBWT in Rust☆45Updated last month
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 4 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Multiple sequence alignment of long tandem repeats☆25Updated 3 weeks ago
- ☆28Updated 9 months ago
- ☆35Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Updated last week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated last year
- A graph aligner☆30Updated last year
- Graph based multi genome aligner☆49Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago