urbanslug / graphiteLinks
A varitation graph tool
☆10Updated 5 years ago
Alternatives and similar repositories for graphite
Users that are interested in graphite are comparing it to the libraries listed below
Sorting:
- Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Updated 7 years ago
- ☆11Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- ☆12Updated 3 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- Population genetics analysis on VG☆16Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆13Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- For bluntifying overlapped GFAs☆13Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Pan gGnome Viewer☆10Updated 5 months ago
- ☆14Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 6 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆17Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- mreps: software for tandem repeat identification in DNA☆15Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago