A varitation graph tool
☆10Dec 23, 2019Updated 6 years ago
Alternatives and similar repositories for graphite
Users that are interested in graphite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- ☆17Aug 25, 2025Updated last year
- BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package☆15May 20, 2014Updated 12 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Concise Common Workflow Language☆29Jul 23, 2026Updated last month
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated last year
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- ☆12Jul 17, 2022Updated 4 years ago
- PyTorch Language Modeling Toolkit for Fast Weight Programmers☆22Jun 11, 2025Updated last year
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Paul Graham's onlisp book in org mode format☆22May 11, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated 2 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- ☆22Sep 9, 2021Updated 5 years ago
- Unified notation for Markov Decision Processes PO(MDP)s☆24Apr 27, 2018Updated 8 years ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated 3 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- Data synthesis code for "AGENT: A Benchmark for Core Psychological Reasoning"☆24Mar 3, 2022Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages☆38Oct 5, 2010Updated 15 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Statistical mixed effects models in Ruby☆21Jul 8, 2016Updated 10 years ago
- Pan gGnome Viewer☆10Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- JavaScript plotting library☆21Dec 29, 2015Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago