☆21Jun 29, 2022Updated 3 years ago
Alternatives and similar repositories for SPOTlight_deconvolution_analysis
Users that are interested in SPOTlight_deconvolution_analysis are comparing it to the libraries listed below
Sorting:
- Spatial Transcriptomics Capture Location Deconvolution☆203Oct 20, 2025Updated 5 months ago
- ☆12Aug 16, 2022Updated 3 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Mar 14, 2026Updated last week
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆22Oct 30, 2022Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆18Feb 13, 2023Updated 3 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- Nested cross-validation with feature selection filters☆15Updated this week
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- ☆53Apr 1, 2021Updated 4 years ago
- funny geom/stat functions for visualization☆11Aug 30, 2023Updated 2 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated 2 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- ☆129Jun 10, 2022Updated 3 years ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 2 months ago
- ☆55Aug 6, 2025Updated 7 months ago
- ☆32Jan 7, 2026Updated 2 months ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- ☆16Sep 13, 2024Updated last year