☆21Jun 29, 2022Updated 3 years ago
Alternatives and similar repositories for SPOTlight_deconvolution_analysis
Users that are interested in SPOTlight_deconvolution_analysis are comparing it to the libraries listed below
Sorting:
- Spatial Transcriptomics Capture Location Deconvolution☆201Oct 20, 2025Updated 4 months ago
- ☆12Aug 16, 2022Updated 3 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Feb 6, 2026Updated 3 weeks ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 4 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 7 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- Tools for analyzing Slide-seq data☆31Oct 30, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆18Feb 13, 2023Updated 3 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- ☆16Sep 13, 2024Updated last year
- ☆15Aug 1, 2021Updated 4 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago