Spatially resolved transcriptomic analysis
☆68Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for SPARK
Users that are interested in SPARK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Test genes for Spatial Variation☆186May 7, 2024Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆252Jun 28, 2026Updated last week
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆25May 19, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆97Apr 30, 2026Updated 2 months ago
- ☆14Jan 16, 2019Updated 7 years ago
- ☆18Nov 24, 2024Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆99Dec 8, 2022Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆68Mar 18, 2025Updated last year
- Multiview Intercellular SpaTial modeling framework☆73Jan 15, 2026Updated 5 months ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- spatial transcriptome, single cell☆76Mar 18, 2023Updated 3 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆132May 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Oct 4, 2022Updated 3 years ago
- ☆28Jun 4, 2023Updated 3 years ago
- ☆132Mar 27, 2022Updated 4 years ago
- ☆160Mar 19, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆467Jan 22, 2026Updated 5 months ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Spatial omics analysis toolbox☆379Jun 2, 2026Updated last month
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆16Apr 13, 2021Updated 5 years ago
- ☆23Sep 20, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 3 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆103Feb 26, 2025Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated last year
- ☆17Feb 18, 2025Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- ☆74May 28, 2025Updated last year
- ☆26Feb 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning cell communication from spatial graphs of cells☆119Jan 15, 2024Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆100Feb 11, 2026Updated 4 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- ☆135Feb 11, 2024Updated 2 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated 11 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago