Use an ensemble of variant callers to call variants from ATAC-seq data
☆23May 14, 2025Updated 11 months ago
Alternatives and similar repositories for varCA
Users that are interested in varCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jan 31, 2023Updated 3 years ago
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆15Aug 15, 2025Updated 8 months ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- ☆59Mar 18, 2026Updated last month
- Statistical Inference for Unsupervised Learning☆17Apr 7, 2026Updated 3 weeks ago
- Pipeline for Universal Mapping of ATAC-seq☆26Sep 23, 2025Updated 7 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆68Jul 8, 2025Updated 9 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last month
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Nov 17, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆24Jan 20, 2026Updated 3 months ago
- ☆19Oct 21, 2024Updated last year
- A Nextflow workflow for HLA typing using HLA-HD☆15Jul 3, 2024Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆111Jan 20, 2025Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆16Jun 2, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆48Dec 12, 2019Updated 6 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆41Nov 24, 2022Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago