nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data
☆25May 19, 2025Updated last year
Alternatives and similar repositories for nnSVG
Users that are interested in nnSVG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 4, 2023Updated 3 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Spatially resolved transcriptomic analysis☆66Nov 17, 2022Updated 3 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Bayesian Analytics for Spatial Segmentation☆31May 4, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Test genes for Spatial Variation☆185May 7, 2024Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.☆21Oct 16, 2014Updated 11 years ago
- ☆27Apr 8, 2025Updated last year
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 9 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated last month
- Profile purification of single-cell spatial transcriptomics data☆46May 28, 2026Updated 2 weeks ago
- Solutions to the labs and exercises in ISL.☆11Jan 21, 2019Updated 7 years ago
- An R package for handling and analysing imaging mass cytometry data☆31May 19, 2026Updated 3 weeks ago
- ☆10Apr 22, 2024Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 9 months ago
- ☆152Mar 20, 2026Updated 2 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆68Mar 18, 2025Updated last year
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- ☆12May 14, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆462Jan 22, 2026Updated 4 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- spatial transcriptome, single cell☆75Mar 18, 2023Updated 3 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆263Feb 9, 2026Updated 4 months ago
- Probabilistic topic model for identifying cellular micro-environments.☆28Jul 6, 2023Updated 2 years ago
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated last month