lmweber / nnSVGLinks
nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data
☆20Updated last month
Alternatives and similar repositories for nnSVG
Users that are interested in nnSVG are comparing it to the libraries listed below
Sorting:
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 6 months ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆36Updated 3 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ☆13Updated 6 years ago
- Hierarchical classification of cells☆23Updated 10 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- ☆19Updated 5 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆41Updated 11 months ago
- ☆28Updated 3 years ago
- ☆16Updated 7 months ago
- ☆54Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Test genes for Spatial Variation☆14Updated 6 months ago
- Spatial Single Cell transcriptomic library☆17Updated last week
- Gene expression deconvolution using dampened weighted least squares☆28Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆29Updated 2 years ago
- CAST package☆40Updated 8 months ago
- ☆28Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month