Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
☆41Oct 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for CyteTypeR
Users that are interested in CyteTypeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆139Oct 29, 2026Updated 2 weeks ago
- R package for normalisation of spatial transcriptomics data☆22Nov 5, 2026Updated last week
- ☆21Oct 23, 2026Updated 2 weeks ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆12Jul 20, 2025Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Nov 2, 2017Updated 9 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆43Nov 18, 2025Updated 11 months ago
- An R package of functions for single cell -omics analysis.☆11Jul 18, 2023Updated 3 years ago
- Single-cell dimensionality reduction toolkit☆13Sep 4, 2026Updated 2 months ago
- R implementation of Robust Rank Aggregation algortihm☆12Jun 8, 2022Updated 4 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Aug 18, 2026Updated 2 months ago
- ☆11Apr 2, 2025Updated last year
- The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification☆15Oct 24, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆18Updated this week
- FastCAR is an R package for Fast Correction of Ambient RNA in droplet based single cell sequencing data☆12Oct 14, 2026Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 9 months ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆15Feb 7, 2024Updated 2 years ago
- ☆36Sep 7, 2026Updated 2 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆56Nov 2, 2026Updated last week
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆33Aug 22, 2025Updated last year
- ☆230Oct 23, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- ☆17Mar 18, 2026Updated 7 months ago
- faster SCENIC workflow with RegDiffusion and GPU support☆17Jul 23, 2026Updated 3 months ago
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- Classification of Single cells by Transfer Learning☆12Oct 11, 2025Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Oct 5, 2026Updated last month
- Fast Wilcoxon and auROC☆221Sep 20, 2026Updated last month
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- ☆23Sep 8, 2023Updated 3 years ago
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- ☆20Jul 28, 2026Updated 3 months ago
- Collection of cell type reference datasets.☆67May 31, 2024Updated 2 years ago
Are these results useful?