Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
☆37Apr 30, 2026Updated last week
Alternatives and similar repositories for CyteTypeR
Users that are interested in CyteTypeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jan 12, 2026Updated 3 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 2 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Apr 24, 2026Updated 2 weeks ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆26Oct 25, 2023Updated 2 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- R package: personal tools for R data processing☆16Apr 19, 2026Updated 2 weeks ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- Profile purification of single-cell spatial transcriptomics data☆38Nov 13, 2025Updated 5 months ago
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 3 months ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Declarative group-wise count and compute, describing your target table☆13Jan 8, 2026Updated 4 months ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Reproducibility notebooks for scPoli☆23May 5, 2023Updated 3 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 6 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- New way to do academic writing.☆22Jan 14, 2021Updated 5 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆94Apr 30, 2026Updated last week
- mesa package for Methylation Enrichment Sequencing Analysis☆16Mar 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆31Aug 22, 2025Updated 8 months ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- BasKet Note Pads - an system for organizing information in KDE.☆15Oct 2, 2014Updated 11 years ago
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- Autocomplete LaTeX symbol into your text via nvim-compe☆15May 14, 2021Updated 4 years ago
- ☆17Oct 4, 2025Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for Unmixing Spectral Flow Cytometry Data☆30Apr 30, 2026Updated last week
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 2 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago