genemine / ireadView external linksLinks
iread
☆25Jul 16, 2021Updated 4 years ago
Alternatives and similar repositories for iread
Users that are interested in iread are comparing it to the libraries listed below
Sorting:
- ☆25Aug 1, 2022Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Visualizing transcript structure and annotation using ggplot2☆165Aug 24, 2024Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Feb 5, 2026Updated last week
- ☆12May 8, 2025Updated 9 months ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- ☆11May 12, 2021Updated 4 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 4, 2026Updated last week
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 2 months ago
- ☆14Aug 31, 2016Updated 9 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated last month
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Jun 12, 2024Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 9 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Oct 15, 2025Updated 3 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 8 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Jul 17, 2024Updated last year
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- ☆12Oct 23, 2023Updated 2 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Formula-Driven Table Generation☆13Dec 14, 2025Updated last month
- HGNC Comparison of Orthology Predictions (HCOP)☆14Mar 22, 2018Updated 7 years ago
- ☆19Nov 17, 2025Updated 2 months ago