iread
☆26Jul 16, 2021Updated 5 years ago
Alternatives and similar repositories for iread
Users that are interested in iread are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement☆10Oct 15, 2020Updated 6 years ago
- ☆25Aug 1, 2022Updated 4 years ago
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆12Oct 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆54Jul 17, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆137Updated this week
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 7 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Dec 18, 2025Updated 10 months ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 6 months ago
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated 3 months ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 10 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- R package for large-scale CNV analysis from RNA-seq☆21Dec 21, 2023Updated 2 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated last month
- A toolset for profiling alternative splicing events in RNA-Seq data.☆97Oct 3, 2026Updated 3 weeks ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Statistical Computing - source Rmarkdown files☆28Apr 3, 2023Updated 3 years ago
- Formula-Driven Table Generation☆14Jun 4, 2026Updated 4 months ago
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 8 years ago
- ☆25Jun 27, 2023Updated 3 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Aug 4, 2026Updated 2 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆24Oct 17, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 4 months ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Tutorials for the Monod package, which fits CME models to sequencing data.☆16Mar 19, 2025Updated last year
- ☆11Mar 19, 2026Updated 7 months ago
- Samtools' manual in Chinese - Samtools中文使用手册☆17Apr 20, 2016Updated 10 years ago