genemine / iread
iread
☆24Updated 3 years ago
Alternatives and similar repositories for iread:
Users that are interested in iread are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- ☆28Updated 3 months ago
- ☆18Updated 8 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- simplified cellranger for long-read data☆18Updated 6 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆23Updated 3 years ago
- DriverPower☆26Updated 2 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated last week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- Filter and prioritize fusion calls☆20Updated 5 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Snakemake pipeline for running MAJIQ☆19Updated last year
- Motif manipulation functions for R.☆28Updated 4 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 3 months ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆18Updated 4 years ago