genemine / ireadLinks
iread
☆25Updated 4 years ago
Alternatives and similar repositories for iread
Users that are interested in iread are comparing it to the libraries listed below
Sorting:
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- interactive plots for differential expression analysis☆33Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- ☆17Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Calculate and plot distributions of genomic ranges☆26Updated 3 months ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 10 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 10 months ago
- DriverPower☆26Updated 6 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago