genemine / ireadLinks
iread
☆25Updated 4 years ago
Alternatives and similar repositories for iread
Users that are interested in iread are comparing it to the libraries listed below
Sorting:
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆17Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated 2 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- DriverPower☆26Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 6 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Create QC and summary reports for Alevin output☆31Updated 3 months ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago