genemine / ireadLinks
iread
☆25Updated 4 years ago
Alternatives and similar repositories for iread
Users that are interested in iread are comparing it to the libraries listed below
Sorting:
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 11 months ago
- ☆17Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- DriverPower☆26Updated 8 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- ☆32Updated 9 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago