Probabilistic pseudotime for single-cell RNA-seq data
☆11Oct 6, 2017Updated 9 years ago
Alternatives and similar repositories for pseudogp
Users that are interested in pseudogp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jul 4, 2017Updated 9 years ago
- Simple App to visualize single cell datasets☆22Apr 12, 2018Updated 8 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- Progression Models for Repeated Measures☆13Feb 19, 2026Updated 8 months ago
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆14Jul 13, 2026Updated 3 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆43Nov 14, 2022Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 7 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 5 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- みんなのRcpp☆14Mar 25, 2020Updated 6 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 2 months ago
- ☆12Apr 1, 2025Updated last year
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- ☆12May 17, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆13May 18, 2018Updated 8 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 9 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆48Jun 12, 2023Updated 3 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 8 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- ☆12Jul 13, 2018Updated 8 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Jun 3, 2019Updated 7 years ago
- Analogue and weighted averaging methods for palaeoecology☆14Oct 19, 2026Updated 2 weeks ago
- Super-resolution of multimodal clinical magnetic resonance images (MRIs)☆16Feb 24, 2023Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- ☆20Jul 8, 2024Updated 2 years ago
- ☆14May 7, 2019Updated 7 years ago
- 🍁 Collection of useful R utilities and snippets☆10Aug 3, 2026Updated 3 months ago