kieranrcampbell / pseudogp
Probabilistic pseudotime for single-cell RNA-seq data
☆10Updated 7 years ago
Alternatives and similar repositories for pseudogp:
Users that are interested in pseudogp are comparing it to the libraries listed below
- ☆19Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Updated 3 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 4 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆20Updated last year
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Interactive benchmarking of ranking and assignment methods☆15Updated 2 months ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆16Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- ☆10Updated 7 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- ☆17Updated 10 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Differential Correlation across Ranked Samples☆12Updated last year