kieranrcampbell / pseudogp
Probabilistic pseudotime for single-cell RNA-seq data
☆10Updated 7 years ago
Alternatives and similar repositories for pseudogp:
Users that are interested in pseudogp are comparing it to the libraries listed below
- ☆19Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- ☆20Updated last year
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Updated 3 years ago
- Differential Correlation across Ranked Samples☆12Updated last year
- post-clustering differential expression test☆35Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- ☆16Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- ☆14Updated 5 years ago
- Inference of switch-like differential expression along single-cell trajectories☆19Updated 7 years ago
- ☆35Updated 7 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Full annotation using shape-constrained trees☆25Updated last year
- scover☆23Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 weeks ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- ☆38Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- ☆11Updated 3 years ago