Alternatives and similar repositories for pseudogp

Users that are interested in pseudogp are comparing it to the libraries listed below

• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆11Updated 6 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• Teichlab / GPfates
  ☆21Updated 8 years ago
• kieranrcampbell / ouija
  Descriptive probabilistic marker gene approach to single-cell pseudotime inference
  ☆29Updated 5 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆36Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆46Updated 7 years ago
• MarioniLab / Deconvolution2016
  Code and manuscript files for Aaron and Karsten's deconvolution paper.
  ☆16Updated 6 years ago
• anna-neufeld / countsplit
  ☆21Updated 2 years ago
• JohnReid / DeLorean
  R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…
  ☆15Updated 4 years ago
• kieranrcampbell / switchde
  Inference of switch-like differential expression along single-cell trajectories
  ☆21Updated 7 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 6 years ago
• kieranrcampbell / embeddr
  This repository is retired software
  ☆13Updated 9 years ago
• ibn-salem / sevenC
  7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
  ☆13Updated 6 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆48Updated 5 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆40Updated last year
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆49Updated 4 months ago
• Simon-Coetzee / StatePaintR
  ☆10Updated 7 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆31Updated last month
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago