kieranrcampbell / pseudogp
Probabilistic pseudotime for single-cell RNA-seq data
☆10Updated 7 years ago
Alternatives and similar repositories for pseudogp
Users that are interested in pseudogp are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Updated 3 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- ☆16Updated 6 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 3 months ago
- post-clustering differential expression test☆35Updated 5 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Differential Correlation across Ranked Samples☆12Updated last year
- easy access to benchmark datasets☆50Updated 6 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- An R package to construct Elastic Principal Graphs☆22Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- ☆21Updated last year
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 weeks ago
- ☆37Updated 8 years ago
- ☆10Updated 7 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- This repository is retired software☆12Updated 9 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago