kieranrcampbell / pseudogpLinks
Probabilistic pseudotime for single-cell RNA-seq data
☆10Updated 7 years ago
Alternatives and similar repositories for pseudogp
Users that are interested in pseudogp are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- R package for benchmarking single cell analysis methods☆31Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- ☆10Updated 7 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- An R package to construct Elastic Principal Graphs☆23Updated 5 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆28Updated 6 years ago
- ☆14Updated 6 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago