Teichlab / SpatialDELinks
Test genes for Spatial Variation
☆170Updated last year
Alternatives and similar repositories for SpatialDE
Users that are interested in SpatialDE are comparing it to the libraries listed below
Sorting:
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆157Updated this week
- Scanpy use cases.☆85Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆151Updated 4 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 6 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆132Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆158Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 3 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 3 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆148Updated 2 months ago
- R package to access DoRothEA's regulons☆148Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆160Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆131Updated 6 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆109Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- Python package to perform enrichment analysis from omics data.☆196Updated this week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆148Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆183Updated 4 years ago
- ☆76Updated this week
- A tool for semi-automatic cell type harmonization and integration☆105Updated 2 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago