mtmorgan / DirichletMultinomial
☆10Updated 4 months ago
Alternatives and similar repositories for DirichletMultinomial:
Users that are interested in DirichletMultinomial are comparing it to the libraries listed below
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 9 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- ☆25Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 10 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- Time-Course Multi-Omics data integration☆24Updated 10 months ago
- ☆32Updated last year
- Microbiome research☆20Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last week
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- ☆13Updated 2 months ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 6 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆22Updated last year
- Linear Decomposition Model☆24Updated last year
- ☆12Updated 7 years ago
- Prediction fitness of leaves on a genealogical tree☆11Updated 9 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆15Updated 8 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago