QuKunLab / COVID-19Links
The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients
☆10Updated 4 years ago
Alternatives and similar repositories for COVID-19
Users that are interested in COVID-19 are comparing it to the libraries listed below
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 6 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- Tools for assessing clustering robustness☆28Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- ☆30Updated 7 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆23Updated last year
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 4 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆59Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 3 weeks ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 2 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago