QuKunLab / COVID-19Links
The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients
☆10Updated 5 years ago
Alternatives and similar repositories for COVID-19
Users that are interested in COVID-19 are comparing it to the libraries listed below
Sorting:
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- ☆23Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 4 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Tools for assessing clustering robustness☆28Updated 3 weeks ago
- ☆61Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 5 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆25Updated 3 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last month
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- ☆39Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆37Updated 7 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 7 months ago
- ☆21Updated 6 months ago