BayraktarLab / cell2locationLinks
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
☆380Updated 2 weeks ago
Alternatives and similar repositories for cell2location
Users that are interested in cell2location are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type classification☆408Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆398Updated 2 months ago
- Benchmarking analysis of data integration tools☆384Updated 3 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆375Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆238Updated last week
- A package to help convert different single-cell data formats to each other☆442Updated last year
- Scanpy Tutorials.☆225Updated this week
- This is the alpha version of the CellOracle package☆383Updated 9 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆229Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆433Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆397Updated last month
- Reference mapping for single-cell genomics☆383Updated last week
- Single-cell epigenomics analysis tools☆289Updated this week
- A toolkit of spatial transcriptomic analysis.☆261Updated 3 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆246Updated this week
- tools and notes for spatial omics☆315Updated 7 months ago
- Python package to perform enrichment analysis from omics data.☆226Updated this week
- Spatial alignment of single cell transcriptomic data.☆325Updated 3 months ago
- Panoramic stitching of single cell data☆289Updated 2 months ago
- ☆359Updated 3 years ago
- RNA Velocity generalized through dynamical modeling☆467Updated 7 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆218Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆235Updated 8 months ago
- Single-cell perturbation analysis☆203Updated last week
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆170Updated last week
- ☆274Updated 11 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆213Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆471Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆239Updated last week