BayraktarLab / cell2locationLinks
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
☆412Updated last month
Alternatives and similar repositories for cell2location
Users that are interested in cell2location are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type classification☆445Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆430Updated 6 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆399Updated 4 months ago
- Scanpy Tutorials.☆232Updated last week
- This is the alpha version of the CellOracle package☆408Updated last year
- Benchmarking analysis of data integration tools☆400Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆259Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆456Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆452Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆236Updated last week
- Reference mapping for single-cell genomics☆397Updated last month
- tools and notes for spatial omics☆341Updated 10 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆371Updated 5 months ago
- CellRank: dynamics from multi-view single-cell data☆411Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆347Updated 6 months ago
- ☆358Updated 4 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆570Updated 6 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆243Updated this week
- Single-cell epigenomics analysis tools☆300Updated 2 weeks ago
- A toolkit of spatial transcriptomic analysis.☆270Updated last month
- Panoramic stitching of single cell data☆292Updated 6 months ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆290Updated this week
- Python package to perform enrichment analysis from omics data.☆248Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆521Updated 3 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆226Updated last year
- RNA Velocity generalized through dynamical modeling☆482Updated 3 weeks ago
- ☆283Updated last year
- Spatial omics analysis toolbox☆355Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆425Updated last month
- Single-cell perturbation analysis☆267Updated last week