zijianni / scCB2

Related projects ⓘ

Alternatives and complementary repositories for scCB2

• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 4 months ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆15Updated 3 months ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 3 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last week
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 5 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 4 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆18Updated last year
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆21Updated last year
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆26Updated 2 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 4 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 4 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• cziegenhain / UMIcountR
  ☆16Updated 2 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 5 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆24Updated 10 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆10Updated last year
• WT215 / bayNorm
  Normalization for single cell RNA-seq data
  ☆9Updated 2 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆17Updated this week
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated last month
• HelenaLC / muscat-comparison
  ☆11Updated 6 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated last month