zijianni / scCB2
R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data
☆10Updated 2 years ago
Alternatives and similar repositories for scCB2
Users that are interested in scCB2 are comparing it to the libraries listed below
Sorting:
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 4 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 10 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- ☆10Updated last year
- Pairwise Hierarchical Model☆17Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆12Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆14Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 weeks ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- ☆16Updated 2 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- scover☆23Updated last year
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- CellAnn☆12Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 3 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- ☆12Updated 11 months ago
- ☆12Updated last year