Alternatives and similar repositories for scCB2

Users that are interested in scCB2 are comparing it to the libraries listed below

• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 9 months ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 4 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆16Updated 3 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• cziegenhain / UMIcountR
  ☆16Updated 3 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 3 years ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆22Updated 2 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated 2 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆18Updated 5 months ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• jingshuw / descend
  ☆18Updated 3 years ago
• BaderLab / Tempora
  Pathway-based trajectory inference method for time-series scRNAseq data
  ☆25Updated 4 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated last year
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• shazanfar / scHOT
  ☆10Updated 2 years ago
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 3 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆14Updated 4 years ago