mukamel-lab / SingleCellFusion
SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
☆12Updated 3 years ago
Alternatives and similar repositories for SingleCellFusion:
Users that are interested in SingleCellFusion are comparing it to the libraries listed below
- ☆20Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 6 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆10Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆10Updated 3 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- RNA velocity validation☆22Updated 3 years ago
- CAST package☆33Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 2 years ago
- CellRank's reproducibility repository.☆14Updated 3 years ago
- Neural Crest Fate Decisions☆10Updated 5 years ago
- Mapping pipeline for snmC-seq based technologies.☆19Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last month
- ☆25Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month