mukamel-lab / SingleCellFusionLinks
SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
☆12Updated 3 years ago
Alternatives and similar repositories for SingleCellFusion
Users that are interested in SingleCellFusion are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last week
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- CAST package☆40Updated 8 months ago
- Low-dimensional Projection of Single Cell Velocity☆27Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- ☆13Updated 3 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 9 months ago
- ☆11Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Python implementation of Gene Trajectory☆25Updated 10 months ago
- ☆25Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Information-based dimensionality reduction☆29Updated 7 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- Neural Crest Fate Decisions☆10Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year