Rapid alignment-free method for introgression screening and GWAS using k-mer profiles
☆31Apr 22, 2026Updated 2 months ago
Alternatives and similar repositories for kcftools
Users that are interested in kcftools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 2 weeks ago
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- Mosaic Genome Assembler☆25Updated this week
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆16Oct 8, 2025Updated 9 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆63Jun 18, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆30Aug 7, 2025Updated 11 months ago
- ☆152Jun 7, 2026Updated last month
- ☆45Dec 11, 2025Updated 7 months ago
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 5 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Updated this week
- ☆18Feb 10, 2026Updated 5 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 11 months ago
- ☆24Feb 26, 2026Updated 4 months ago
- ☆24Nov 19, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust identification of orthologous Synteny with the Orthology Index☆43Jul 9, 2026Updated last week
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 8 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆16Jul 8, 2026Updated last week
- ☆22Jul 13, 2026Updated last week
- ☆23Jul 8, 2026Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- ☆18Apr 26, 2026Updated 2 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- ☆15May 3, 2023Updated 3 years ago
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆30Apr 17, 2025Updated last year
- Find and decompose genomic variation sites in pangenome graphs☆16Updated this week
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆135Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated 3 weeks ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 2 months ago
- Multi-genome synteny block visualization tool☆63Jul 6, 2026Updated 2 weeks ago
- Enumerating bubbles in pangenome graphs☆15Updated this week
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆52Jun 5, 2026Updated last month
- ☆47Jun 27, 2026Updated 3 weeks ago