Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
☆152Jan 20, 2023Updated 3 years ago
Alternatives and similar repositories for Ligand-Receptor-Pairs
Users that are interested in Ligand-Receptor-Pairs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- Spatial omics analysis toolbox☆369Apr 7, 2026Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆636Nov 12, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LIANA+: an all-in-one framework for cell-cell communication☆281Jan 24, 2026Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- ☆361Dec 9, 2021Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 11 months ago
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆185Mar 27, 2025Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆18Dec 19, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆152Feb 13, 2025Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 4 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆777Jan 6, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆177Jun 10, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Updated this week
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆327Apr 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28Jan 31, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 9 months ago
- ☆23Jul 9, 2025Updated 9 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆35Jun 19, 2025Updated 9 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- R client for the OmniPath web service☆163Mar 25, 2026Updated 2 weeks ago
- ☆66Aug 2, 2019Updated 6 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆29Mar 2, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆120Jan 30, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆307Mar 6, 2023Updated 3 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆294Jun 17, 2025Updated 9 months ago