LewisLabUCSD / Ligand-Receptor-Pairs
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
☆124Updated last year
Alternatives and similar repositories for Ligand-Receptor-Pairs:
Users that are interested in Ligand-Receptor-Pairs are comparing it to the libraries listed below
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆153Updated 6 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆119Updated 8 months ago
- A tool for semi-automatic cell type harmonization and integration☆99Updated 11 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆109Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆141Updated this week
- ☆113Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆182Updated 4 months ago
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- Spatial transcriptomics of heart tissue☆78Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆133Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated last month
- A Bayesian model for compositional single-cell data analysis☆155Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆194Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆95Updated this week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆50Updated 8 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆192Updated 9 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆120Updated 2 months ago
- Python package to perform enrichment analysis from omics data.☆176Updated last month
- Scissor package☆199Updated 8 months ago
- ☆126Updated last year
- Benchmarking computational single cell ATAC-seq methods☆179Updated 4 years ago
- ☆65Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆158Updated 3 weeks ago
- Test genes for Spatial Variation☆153Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆61Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 6 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆111Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆102Updated last week