Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
☆155Jan 20, 2023Updated 3 years ago
Alternatives and similar repositories for Ligand-Receptor-Pairs
Users that are interested in Ligand-Receptor-Pairs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆248Aug 7, 2024Updated 2 years ago
- Spatial omics analysis toolbox☆388Updated this week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LIANA+: an all-in-one framework for cell-cell communication☆313Updated this week
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆482Jun 6, 2025Updated last year
- ☆363Dec 9, 2021Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆196Aug 24, 2026Updated last week
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆155Jun 26, 2026Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 9 months ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆185Jun 10, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆347Apr 23, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- ☆25Jul 9, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- ☆70Aug 2, 2019Updated 7 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 2 months ago
- R client for the OmniPath web service☆173Aug 3, 2026Updated last month
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆311Mar 6, 2023Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆126Jan 30, 2023Updated 3 years ago
- Single cell omics biology annotations☆61Updated this week
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 6 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆311Jun 17, 2025Updated last year