LewisLabUCSD / Ligand-Receptor-PairsLinks
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
☆137Updated 2 years ago
Alternatives and similar repositories for Ligand-Receptor-Pairs
Users that are interested in Ligand-Receptor-Pairs are comparing it to the libraries listed below
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 5 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Spatial transcriptomics of heart tissue☆89Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 4 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆99Updated 5 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆138Updated last month
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Test genes for Spatial Variation☆174Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆163Updated this week
- Predict RNA velocity through deep learning☆70Updated last year
- ☆110Updated 2 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆131Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆110Updated 10 months ago
- Python package to perform enrichment analysis from omics data.☆215Updated last week
- A Bayesian model for compositional single-cell data analysis☆170Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆75Updated 6 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆156Updated last week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- ☆80Updated last week
- A tool for semi-automatic cell type harmonization and integration☆108Updated 4 months ago
- Multi-omic velocity inference☆110Updated 9 months ago
- ☆124Updated 3 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago