R package to do the Ligand Receptor Analysis Visualization
☆50Aug 18, 2026Updated last month
Alternatives and similar repositories for CrossTalkeR
Users that are interested in CrossTalkeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- comprehensive analysis of single-cell transcriptomics data☆25Jul 14, 2026Updated 2 months ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆26Oct 14, 2025Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for Protein activity analysis of single-cell RNAseq.☆88Jun 17, 2026Updated 3 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated last year
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 3 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated 3 weeks ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 4, 2026Updated 2 weeks ago
- ☆32Apr 9, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆249Aug 7, 2024Updated 2 years ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆679Jun 1, 2026Updated 3 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 7 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆86Jul 25, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated last year
- factor models for omics data☆47Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆68Jun 9, 2025Updated last year
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- ☆52Jan 16, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- AnnData interoperability in R☆196Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆486Jun 6, 2025Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 7 months ago
- BioCarta pathway images☆11Jan 30, 2026Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆146Mar 13, 2026Updated 6 months ago