R package to do the Ligand Receptor Analysis Visualization
☆50Apr 30, 2026Updated last month
Alternatives and similar repositories for CrossTalkeR
Users that are interested in CrossTalkeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- comprehensive analysis of single-cell transcriptomics data☆25Apr 8, 2026Updated 2 months ago
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆32Apr 9, 2022Updated 4 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆12Oct 23, 2024Updated last year
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21May 27, 2026Updated last week
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 10 months ago
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆78Mar 28, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methods for detecting doublets in single-cell sequencing data☆252Jun 1, 2026Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆655Jun 1, 2026Updated last week
- A package to help convert different single-cell data formats to each other☆468Feb 20, 2026Updated 3 months ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆45Sep 20, 2024Updated last year
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated 3 weeks ago
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆61Updated this week
- ☆50Jan 16, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆474Jun 6, 2025Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 3 months ago
- BioCarta pathway images☆11Jan 30, 2026Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 months ago
- Use hodge decomposition for trajectory analysis☆25May 11, 2026Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago