inferring cell-cell communication from scRNA-seq of ligand-receptor
☆90Oct 6, 2023Updated 3 years ago
Alternatives and similar repositories for cellcall
Users that are interested in cellcall are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆70Aug 2, 2019Updated 7 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆683Oct 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 7 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆313Dec 16, 2025Updated 10 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆158Jan 14, 2026Updated 9 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- R package to access DoRothEA's regulons☆163Feb 24, 2024Updated 2 years ago
- Gene set scoring for single-cell data☆214Sep 8, 2026Updated last month
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆203Aug 12, 2025Updated last year
- Quantifying metabolism activity at the single-cell resolution☆201Aug 20, 2026Updated 2 months ago
- ☆185May 4, 2026Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆126Jan 22, 2024Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆155Jan 20, 2023Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆146Mar 13, 2026Updated 7 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scissor package☆279May 10, 2024Updated 2 years ago
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- ☆317Nov 10, 2024Updated last year
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated last year
- Cell type prioritization in single-cell data☆153Mar 26, 2026Updated 7 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆683Mar 11, 2026Updated 7 months ago