ShellyCoder / cellcallLinks
inferring cell-cell communication from scRNA-seq of ligand-receptor
☆82Updated last year
Alternatives and similar repositories for cellcall
Users that are interested in cellcall are comparing it to the libraries listed below
Sorting:
- ☆61Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆105Updated last month
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago
- The integration of single cell rank-based gene set enrichment analysis☆124Updated 10 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated 7 months ago
- Construct Tumor Transition Zone Microenvironment☆44Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- ☆50Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆78Updated 7 months ago
- ☆52Updated 8 months ago
- A tool for semi-automatic cell type harmonization and integration☆107Updated 2 months ago
- ☆45Updated 3 years ago
- Create stacked violin plot☆49Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- ☆30Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆116Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆71Updated 2 years ago
- A R package for advanced single cell data viz☆67Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆49Updated 3 years ago
- R package for semi-supervised single-cell data integration☆82Updated last month