theislab / ncem_tutorialsLinks
☆13Updated 2 years ago
Alternatives and similar repositories for ncem_tutorials
Users that are interested in ncem_tutorials are comparing it to the libraries listed below
Sorting:
- CAST package☆40Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆19Updated 2 weeks ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 9 months ago
- ☆29Updated 4 months ago
- ☆13Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆30Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- ☆20Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆53Updated last month
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- ☆21Updated 3 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆25Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- ☆26Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆19Updated last year
- ☆13Updated last week
- ☆14Updated 2 weeks ago
- Python implementation of Gene Trajectory☆25Updated 9 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago