Alternatives and similar repositories for ncem_tutorials

Users that are interested in ncem_tutorials are comparing it to the libraries listed below

• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated 2 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 5 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆29Updated last year
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• devsystemslab / snapseed
  ☆22Updated 7 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 8 months ago
• bhuvad / SpaNorm
  R package for normalisation of spatial transcriptomics data
  ☆14Updated 4 months ago
• yunguan-wang / Spacia
  ☆30Updated 6 months ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year
• theislab / cross_system_integration
  ☆13Updated 2 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆13Updated last year
• LiHongCSBLab / SOAPy
  ☆31Updated 8 months ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆18Updated 3 weeks ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 3 weeks ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 7 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆43Updated last month
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆11Updated 2 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆26Updated 2 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆28Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated last month
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆57Updated 2 weeks ago
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆17Updated 8 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 3 months ago
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆63Updated last year
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated this week
• seasoncloud / Clonalscope
  Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…
  ☆24Updated last month