HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
☆23Aug 30, 2024Updated 2 years ago
Alternatives and similar repositories for HoloNet
Users that are interested in HoloNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated 2 years ago
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- ☆152Jun 25, 2026Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆34Jul 16, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 4 years ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 6 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 3 years ago
- ☆10Jan 22, 2025Updated last year
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 11 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- ☆11Jul 5, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Simulation of somatically rearranged genomes☆11Jul 8, 2017Updated 9 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆44Mar 30, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆191Jan 8, 2026Updated 9 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- overview of spatial datasets☆79Updated this week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆42Aug 23, 2023Updated 3 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆161Aug 3, 2025Updated last year
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 5 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- ☆23Sep 20, 2022Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- ☆11Apr 1, 2024Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Jan 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- ☆23Oct 30, 2022Updated 4 years ago
- SONAR is the algorithm of cell-type deconvolution for spatial transcriptomics☆10May 11, 2026Updated 5 months ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆16Apr 9, 2021Updated 5 years ago