HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
☆22Aug 30, 2024Updated last year
Alternatives and similar repositories for HoloNet
Users that are interested in HoloNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆36Mar 30, 2025Updated 11 months ago
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 10 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆169Jan 8, 2026Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆76Nov 2, 2025Updated 4 months ago
- ☆11Apr 1, 2024Updated last year
- Spatially resolved transcriptomic analysis☆64Nov 17, 2022Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆74Jan 17, 2025Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- ☆19Jul 28, 2025Updated 7 months ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆236Aug 7, 2024Updated last year
- ☆43May 31, 2024Updated last year
- ☆19Jul 17, 2024Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model☆15Nov 8, 2020Updated 5 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆91Dec 8, 2022Updated 3 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ☆22Oct 30, 2022Updated 3 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago
- Learning cell communication from spatial graphs of cells☆114Jan 15, 2024Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- A repository to host extended examples and tutorials.☆11Dec 17, 2025Updated 3 months ago
- Perturb-seq analysis package☆16May 2, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 8 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 4 months ago