Alternatives and similar repositories for HoloNet

Users that are interested in HoloNet are comparing it to the libraries listed below

• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• viannegao / ChromaFold
  ☆28Updated 11 months ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆14Updated last year
• zcang / SpaOTsc
  ☆45Updated last month
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆37Updated 2 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• TencentAILabHealthcare / pysodb
  ☆24Updated last year
• Roy-lab / scMTNI
  ☆30Updated last month
• bowang-lab / DeepVelo
  ☆46Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 10 months ago
• bm2-lab / scMVP
  ☆32Updated 4 months ago
• LungCellAtlas / mapping_data_to_the_HLCA
  Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
  ☆19Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆28Updated this week
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆64Updated last month
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 3 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• theislab / scTab
  ☆59Updated 11 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago