Spatial direct messaging detected by bivariate Moran
☆31Jul 16, 2025Updated 8 months ago
Alternatives and similar repositories for SpatialDM
Users that are interested in SpatialDM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated last week
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- ☆27Jul 2, 2024Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 5 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆30Dec 3, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 11 months ago
- BANKSY: spatial clustering☆139Oct 15, 2025Updated 5 months ago
- HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shapin…☆22Aug 30, 2024Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- ☆31Apr 9, 2022Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆19Oct 20, 2023Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- Spot pseudo-Imager on top of histology☆48Dec 12, 2025Updated 3 months ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆62Mar 23, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- ☆134Apr 24, 2024Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆21Apr 27, 2025Updated 11 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 6 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- ☆130Jun 10, 2022Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆578Mar 4, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆21May 6, 2025Updated 11 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆101Mar 25, 2026Updated 2 weeks ago
- Implementation of CellNEST method☆63Apr 2, 2026Updated last week
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Oct 8, 2025Updated 6 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated 10 months ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- CAST package☆43Oct 26, 2024Updated last year