StatBiomed / SpatialDM
Spatial direct messaging detected by bivariate Moran
☆25Updated last month
Alternatives and similar repositories for SpatialDM:
Users that are interested in SpatialDM are comparing it to the libraries listed below
- Bayesian Analytics for Spatial Segmentation☆23Updated 4 months ago
- Single cell omics biology annotations☆49Updated 3 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated 2 weeks ago
- ☆12Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated this week
- CAST package☆29Updated 3 months ago
- ☆44Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 5 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last year
- ☆16Updated this week
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 6 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 3 months ago
- Gene group activity utility functions for Scanpy☆67Updated last month
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆26Updated 11 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- Code used to benchmark Xenium☆43Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆18Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆22Updated 3 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 3 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 10 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆23Updated last year
- ☆44Updated 9 months ago
- Spatial Cellular Estimator for Tumors☆47Updated this week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 4 months ago
- ☆20Updated last year
- Multi-resolution Variational Inference☆22Updated this week
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Updated 2 years ago