multitalk / awesome-cell-cell-communicationLinks
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
☆56Updated 6 months ago
Alternatives and similar repositories for awesome-cell-cell-communication
Users that are interested in awesome-cell-cell-communication are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- Spatial transcriptomics of heart tissue☆103Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- ☆119Updated 6 months ago
- Single cell omics biology annotations☆51Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆125Updated 3 weeks ago
- R implementation of GeneTrajectory☆68Updated last year
- Multi-omic velocity inference☆113Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- ☆61Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆126Updated 3 years ago
- trajectory inference☆105Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Gene group activity utility functions for Scanpy☆99Updated 11 months ago
- inferring regulatory cellular dynamics☆61Updated 2 months ago
- ☆131Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Accurate and fast cell marker gene identification with COSG☆53Updated 2 months ago