multitalk / awesome-cell-cell-communicationLinks
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
☆55Updated 4 months ago
Alternatives and similar repositories for awesome-cell-cell-communication
Users that are interested in awesome-cell-cell-communication are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆71Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Single cell omics biology annotations☆51Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated last month
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- Gene group activity utility functions for Scanpy☆92Updated 9 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- R implementation of GeneTrajectory☆65Updated last year
- ☆46Updated last year
- ☆116Updated 4 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- ☆125Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆141Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- A tool for semi-automatic cell type harmonization and integration☆111Updated 6 months ago
- ☆59Updated 3 months ago
- Spatial transcriptomics of heart tissue☆96Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆69Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆51Updated 6 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- trajectory inference☆105Updated 8 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆131Updated last year