multitalk / awesome-cell-cell-communicationLinks
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
☆53Updated 2 months ago
Alternatives and similar repositories for awesome-cell-cell-communication
Users that are interested in awesome-cell-cell-communication are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆70Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆53Updated 2 years ago
- R implementation of GeneTrajectory☆63Updated last year
- Single cell omics biology annotations☆51Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- Spatial transcriptomics of heart tissue☆92Updated last year
- ☆113Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- ☆55Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- trajectory inference☆104Updated 7 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last week
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Updated 4 years ago
- ☆46Updated last year
- Multi-omic velocity inference☆110Updated 10 months ago
- ☆125Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- inferring regulatory cellular dynamics☆52Updated this week
- ☆56Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆67Updated last month