multitalk / awesome-cell-cell-communication
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
☆45Updated last week
Alternatives and similar repositories for awesome-cell-cell-communication:
Users that are interested in awesome-cell-cell-communication are comparing it to the libraries listed below
- Predict RNA velocity through deep learning☆68Updated last year
- Single cell omics biology annotations☆51Updated last month
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆50Updated 7 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- R implementation of GeneTrajectory☆58Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆44Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆67Updated 2 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆71Updated last week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 7 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last month
- ☆44Updated 11 months ago
- inferring regulatory cellular dynamics☆36Updated 3 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆63Updated 2 years ago
- ☆116Updated 3 years ago
- Gene group activity utility functions for Scanpy☆72Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆72Updated last month
- ☆40Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆62Updated 3 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year