Alternatives and similar repositories for awesome-cell-cell-communication

Users that are interested in awesome-cell-cell-communication are comparing it to the libraries listed below

• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 3 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆103Updated 10 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆75Updated 6 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆70Updated last week
• ShobiStassen / VIA
  trajectory inference
  ☆104Updated 6 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆62Updated last year
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆110Updated 10 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆50Updated last week
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆65Updated 6 months ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆76Updated 3 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆63Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆83Updated 7 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆51Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆89Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• navinlabcode / CellTrek
  ☆124Updated 3 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• Durenlab / LINGER
  ☆111Updated 2 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 5 months ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• rajewsky-lab / novosparc
  ☆131Updated last year
• LiQian-XC / sctour
  A deep learning architecture for robust inference and accurate prediction of cellular dynamics
  ☆67Updated 2 weeks ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆76Updated 2 weeks ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆79Updated 4 months ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆58Updated 2 years ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆121Updated 3 weeks ago